WebIn addition to the above 6 keys: map, mean, std, readlen, sample, and exe, BreakDancerMax allows users to explicitly specify the separation thresholds using the keys: upper and lower. For example: map:1.map upper:300 lower:100 readlen:36.00 sample:tA exe:maq-0.6.8 mapview -b. This will instruct BreakDancerMax to detect deletions using … WebI am trying to run breakdancer_max (version 1.4.5, perl) with three BAM files, and the documentation says, "This step normally takes 12 hours or so for three bam files, 8 hours or so for two bam files for cpp version, around three days for perl version." However, when I run breakdancer_max, the script only takes about 20-30 minutes, and it ...
Comparison of multiple algorithms to reliably detect
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Jvarkit : Java utilities for Bioinformatics - GitHub Pages
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